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Learning about gene regulatory network inference.
😳
Learning about gene regulatory network inference.

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@datasnakes @cantonmsnaacp @bioinformatics-collaborative @r-bioinformatics @freecodecampjxn @u-brite @uab-cgds-worthey

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sdhutchins/README.md

πŸ‘‹πŸΎ Welcome!

I'm Shaurita D. Hutchins, a PhD student in Genetics, Genomics, and Bioinformatics at UAB. My research combines computational biology, rare disease genomics, and bioinformatics tool development. I focus on identifying genetic modifiers and building tools to advance rare disease research, especially in pulmonary arterial hypertension.

Explore some open-source apps I've built in Shiny and Streamlit.

πŸ‘©πŸΎβ€πŸ”¬ About Me

  • Pronouns: she/her/hers
  • Current Work: Drug repositioning and gene-disease association pipelines
  • Learning: Machine learning for precision medicine, reproducible and FAIR AI workflows
  • Collaborate With Me On:
    • LLM-powered tools for hypothesis generation
    • Projects that support diversity in STEM and expand access to computational biology
    • View my collaboration repo
  • Topics I Love Discussing:
    • Rare disease research (especially Heritable Pulmonary Arterial Hypertension)
    • Systems thinking - Talking about and thinking about thinking

πŸ› οΈ Tools & Tech

Python R Bash OpenStack Streamlit Shiny Docker VS Code

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  1. Pakillo/grateful Pakillo/grateful Public

    Facilitate citation of R packages

    R 237 19

  2. JonnyTran/OpenOmics JonnyTran/OpenOmics Public

    A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

    Python 36 11

  3. flask-demo flask-demo Public template

    A mobile-responsive demo flask website that includes a login page.

    CSS 25 18

  4. datasnakes/awesome-reproducible-R datasnakes/awesome-reproducible-R Public

    An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.

    R 15

  5. labrat labrat Public

    A basic science lab framework aimed at reproducibility and lab management.

    Python 13 5

  6. datasnakes/OrthoEvolution datasnakes/OrthoEvolution Public

    An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐡

    Python 28 4